The LIBI Grid Platform for Bioinformatics

M. Mirto; I. Epicoco; S. Fiore; M. Cafaro; A. Negro; D. Tartarini; D. Lezzi; O. Marra; A. Turi; A. Ferramosca; V. Zara; G. Aloisio; G. Donvito; L. Carota; G. Cuscela; G. P. Maggi; G. La Rocca; M. Mazzucato; S. My; G. Selvaggi; G. Scioscia; P. Leo; L. Di Pace; G. Pappada’; V. Quinto; M. Berardi; F. Falciano; A. Emerson; E. Rossi; G. Lavorgna; A. Vanni; L. Bartoli; P. Di Lena; P. Fariselli; R. Fronza; L. Margara; L. Montanucci; P. L. Martelli; I. Rossi; M. Vassura; R. Casadio; T. Castrignanò; D. D’Elia; G. Grillo; F. Licciulli; S. Liuni; A. Gisel; M. Santamaria; S. Vicario; C. Saccone; A. Anselmo; D. S. Horner; Flavio MIGNONE; G. Pavesi; E. Picardi; V. Piccolo; M. Re'; F. Zambelli; G. Pesole

The LIBI Grid Platform for Bioinformatics

M. Mirto
, I. Epicoco
, S. Fiore
, M. Cafaro
, A. Negro
, D. Tartarini
, D. Lezzi
, O. Marra
, A. Turi
, A. Ferramosca
, V. Zara
, G. Aloisio
, G. Donvito
, L. Carota
, G. Cuscela
, G. P. Maggi
, G. La Rocca
, M. Mazzucato
, S. My
, G. Selvaggi

G. Scioscia, P. Leo, L. Di Pace, G. Pappada’, V. Quinto, M. Berardi, F. Falciano, A. Emerson, E. Rossi, G. Lavorgna, A. Vanni, L. Bartoli, P. Di Lena, P. Fariselli, R. Fronza, L. Margara, L. Montanucci, P. L. Martelli, I. Rossi, M. Vassura, R. Casadio, T. Castrignanò, D. D’Elia, G. Grillo, F. Licciulli, S. Liuni, A. Gisel, M. Santamaria, S. Vicario, C. Saccone, A. Anselmo, D. S. Horner, Flavio MIGNONE, G. Pavesi, E. Picardi, V. Piccolo, M. Re', F. Zambelli, G. Pesole

Dipartimento di Scienze e Innovazione Tecnologica

Risultato della ricerca: Capitolo in libro/report/atti di convegno › Contributo in volume (Capitolo o Saggio)

Abstract

The LIBI project (International Laboratory of BioInformatics), which started in 2005 and will end in 2009, was initiated with the aim of setting up an advanced bioinformatics and computational biology laboratory, focusing on basic and applied research in modern biology and biotechnologies. One of the two goals of this project has been the development of a Grid Problem Solving Environment, built on top of EGEE, DEISA and SPACI infrastructures, to allow the submission and monitoring of jobs mapped to complex experiments in bioinformatics. In this work we describe the architecture of this environment and describe several case studies and related results which have been obtained using it.

Lingua originale	Inglese
Titolo della pubblicazione ospite	Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare
Editore	IGI GLOBAL
Pagine	577-613
Numero di pagine	37
ISBN (stampa)	9781605663746
Stato di pubblicazione	Pubblicato - 1 gen 2009

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Mirto, M., Epicoco, I., Fiore, S., Cafaro, M., Negro, A., Tartarini, D., Lezzi, D., Marra, O., Turi, A., Ferramosca, A., Zara, V., Aloisio, G., Donvito, G., Carota, L., Cuscela, G., Maggi, G. P., Rocca, G. L., Mazzucato, M., My, S., ... Pesole, G. (2009). The LIBI Grid Platform for Bioinformatics. In Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare (pagg. 577-613). IGI GLOBAL.

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title = "The LIBI Grid Platform for Bioinformatics",

abstract = "The LIBI project (International Laboratory of BioInformatics), which started in 2005 and will end in 2009, was initiated with the aim of setting up an advanced bioinformatics and computational biology laboratory, focusing on basic and applied research in modern biology and biotechnologies. One of the two goals of this project has been the development of a Grid Problem Solving Environment, built on top of EGEE, DEISA and SPACI infrastructures, to allow the submission and monitoring of jobs mapped to complex experiments in bioinformatics. In this work we describe the architecture of this environment and describe several case studies and related results which have been obtained using it.",

author = "M. Mirto and I. Epicoco and S. Fiore and M. Cafaro and A. Negro and D. Tartarini and D. Lezzi and O. Marra and A. Turi and A. Ferramosca and V. Zara and G. Aloisio and G. Donvito and L. Carota and G. Cuscela and Maggi, \{G. P.\} and Rocca, \{G. La\} and M. Mazzucato and S. My and G. Selvaggi and G. Scioscia and P. Leo and Pace, \{L. Di\} and G. Pappada{\textquoteright} and V. Quinto and M. Berardi and F. Falciano and A. Emerson and E. Rossi and G. Lavorgna and A. Vanni and L. Bartoli and Lena, \{P. Di\} and P. Fariselli and R. Fronza and L. Margara and L. Montanucci and Martelli, \{P. L.\} and I. Rossi and M. Vassura and R. Casadio and T. Castrignan{\`o} and D. D{\textquoteright}Elia and G. Grillo and F. Licciulli and S. Liuni and A. Gisel and M. Santamaria and S. Vicario and C. Saccone and A. Anselmo and Horner, \{D. S.\} and Flavio MIGNONE and G. Pavesi and E. Picardi and V. Piccolo and M. Re' and F. Zambelli and G. Pesole",

year = "2009",

month = jan,

day = "1",

language = "English",

isbn = "9781605663746",

pages = "577--613",

booktitle = "Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare",

publisher = "IGI GLOBAL",

}

Mirto, M, Epicoco, I, Fiore, S, Cafaro, M, Negro, A, Tartarini, D, Lezzi, D, Marra, O, Turi, A, Ferramosca, A, Zara, V, Aloisio, G, Donvito, G, Carota, L, Cuscela, G, Maggi, GP, Rocca, GL, Mazzucato, M, My, S, Selvaggi, G, Scioscia, G, Leo, P, Pace, LD, Pappada’, G, Quinto, V, Berardi, M, Falciano, F, Emerson, A, Rossi, E, Lavorgna, G, Vanni, A, Bartoli, L, Lena, PD, Fariselli, P, Fronza, R, Margara, L, Montanucci, L, Martelli, PL, Rossi, I, Vassura, M, Casadio, R, Castrignanò, T, D’Elia, D, Grillo, G, Licciulli, F, Liuni, S, Gisel, A, Santamaria, M, Vicario, S, Saccone, C, Anselmo, A, Horner, DS, MIGNONE, F, Pavesi, G, Picardi, E, Piccolo, V, Re', M, Zambelli, F & Pesole, G 2009, The LIBI Grid Platform for Bioinformatics. in Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare. IGI GLOBAL, pagg. 577-613.

TY - CHAP

T1 - The LIBI Grid Platform for Bioinformatics

AU - Mirto, M.

AU - Epicoco, I.

AU - Fiore, S.

AU - Cafaro, M.

AU - Negro, A.

AU - Tartarini, D.

AU - Lezzi, D.

AU - Marra, O.

AU - Turi, A.

AU - Ferramosca, A.

AU - Zara, V.

AU - Aloisio, G.

AU - Donvito, G.

AU - Carota, L.

AU - Cuscela, G.

AU - Maggi, G. P.

AU - Rocca, G. La

AU - Mazzucato, M.

AU - My, S.

AU - Selvaggi, G.

AU - Scioscia, G.

AU - Leo, P.

AU - Pace, L. Di

AU - Pappada’, G.

AU - Quinto, V.

AU - Berardi, M.

AU - Falciano, F.

AU - Emerson, A.

AU - Rossi, E.

AU - Lavorgna, G.

AU - Vanni, A.

AU - Bartoli, L.

AU - Lena, P. Di

AU - Fariselli, P.

AU - Fronza, R.

AU - Margara, L.

AU - Montanucci, L.

AU - Martelli, P. L.

AU - Rossi, I.

AU - Vassura, M.

AU - Casadio, R.

AU - Castrignanò, T.

AU - D’Elia, D.

AU - Grillo, G.

AU - Licciulli, F.

AU - Liuni, S.

AU - Gisel, A.

AU - Santamaria, M.

AU - Vicario, S.

AU - Saccone, C.

AU - Anselmo, A.

AU - Horner, D. S.

AU - MIGNONE, Flavio

AU - Pavesi, G.

AU - Picardi, E.

AU - Piccolo, V.

AU - Re', M.

AU - Zambelli, F.

AU - Pesole, G.

PY - 2009/1/1

Y1 - 2009/1/1

N2 - The LIBI project (International Laboratory of BioInformatics), which started in 2005 and will end in 2009, was initiated with the aim of setting up an advanced bioinformatics and computational biology laboratory, focusing on basic and applied research in modern biology and biotechnologies. One of the two goals of this project has been the development of a Grid Problem Solving Environment, built on top of EGEE, DEISA and SPACI infrastructures, to allow the submission and monitoring of jobs mapped to complex experiments in bioinformatics. In this work we describe the architecture of this environment and describe several case studies and related results which have been obtained using it.

AB - The LIBI project (International Laboratory of BioInformatics), which started in 2005 and will end in 2009, was initiated with the aim of setting up an advanced bioinformatics and computational biology laboratory, focusing on basic and applied research in modern biology and biotechnologies. One of the two goals of this project has been the development of a Grid Problem Solving Environment, built on top of EGEE, DEISA and SPACI infrastructures, to allow the submission and monitoring of jobs mapped to complex experiments in bioinformatics. In this work we describe the architecture of this environment and describe several case studies and related results which have been obtained using it.

UR - https://iris.uniupo.it/handle/11579/23043

M3 - Chapter

SN - 9781605663746

SP - 577

EP - 613

BT - Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare

PB - IGI GLOBAL

ER -

The LIBI Grid Platform for Bioinformatics

Abstract

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