TY - JOUR
T1 - Structure of fully protonated proteins by proton-detected magic- Angle spinning NMR
AU - Andreas, Loren B.
AU - Jaudzems, Kristaps
AU - Stanek, Jan
AU - Lalli, Daniela
AU - Bertarelloa, Andrea
AU - Marchand, Tanguy Le
AU - De Paepe, Diane Cala
AU - Kotelovica, Svetlana
AU - Akopjana, Inara
AU - Knott, Benno
AU - Wegner, Sebastian
AU - Engelke, Frank
AU - Lesage, Anne
AU - Emsley, Lyndon
AU - Tars, Kaspars
AU - Herrmann, Torsten
AU - Pintacuda, Guido
N1 - Funding Information:
We thank Lénaïc Leroux for technical assistance with the NMR spectrometers. We acknowledge financial support from CNRS (IRRMNFR3050 and Fondation pour la Chimie des Substances Naturelles), from the People Programme of the European Union's Seventh Framework Programme (FP7) (FP7-PEOPLE-2012-ITN 317127 "pNMR"), and from the European Research Council under the European Union's Horizon 2020 Research and Innovation Programme (Grant 648974 "P-MEM-NMR"). L.B.A., K.J., and J.S. are supported by three Marie Curie incoming fellowships (Research Executive Agency Grant Agreements 624918 "MEM-MAS, " 661175 "virus-DNPNMR, " and 661799 "COMPLEX-FAST-MAS"). J.S. received support from a European Molecular Biology Organization fellowship (ALTF 1506-2014, LTFCOFUND2013, and GA-2013-609409).
PY - 2016/8/16
Y1 - 2016/8/16
N2 - Protein structure determination by proton-detected magic- Angle spinning (MAS) NMR has focused on highly deuterated samples, in which only a small number of protons are introduced and observation of signals from side chains is extremely limited. Here, we show in two fully protonated proteins that, at 100-kHz MAS and above, spectral resolution is high enough to detect resolved correlations from amide and side-chain protons of all residue types, and to reliably measure a dense network of 1H-1H proximities that define a protein structure. The high data quality allowed the correct identification of internuclear distance restraints encoded in 3D spectra with automated data analysis, resulting in accurate, unbiased, and fast structure determination. Additionally, we find that narrower proton resonance lines, longer coherence lifetimes, and improved magnetization transfer offset the reduced sample size at 100-kHz spinning and above. Less than 2 weeks of experiment time and a single 0.5-mg sample was sufficient for the acquisition of all data necessary for backbone and side-chain resonance assignment and unsupervised structure determination. We expect the technique to pave the way for atomic-resolution structure analysis applicable to a wide range of proteins.
AB - Protein structure determination by proton-detected magic- Angle spinning (MAS) NMR has focused on highly deuterated samples, in which only a small number of protons are introduced and observation of signals from side chains is extremely limited. Here, we show in two fully protonated proteins that, at 100-kHz MAS and above, spectral resolution is high enough to detect resolved correlations from amide and side-chain protons of all residue types, and to reliably measure a dense network of 1H-1H proximities that define a protein structure. The high data quality allowed the correct identification of internuclear distance restraints encoded in 3D spectra with automated data analysis, resulting in accurate, unbiased, and fast structure determination. Additionally, we find that narrower proton resonance lines, longer coherence lifetimes, and improved magnetization transfer offset the reduced sample size at 100-kHz spinning and above. Less than 2 weeks of experiment time and a single 0.5-mg sample was sufficient for the acquisition of all data necessary for backbone and side-chain resonance assignment and unsupervised structure determination. We expect the technique to pave the way for atomic-resolution structure analysis applicable to a wide range of proteins.
KW - Magic- Angle spinning
KW - NMR spectroscopy
KW - Protein structures
KW - Proton detection
KW - Viral nucleocapsids
UR - http://www.scopus.com/inward/record.url?scp=84982179524&partnerID=8YFLogxK
U2 - 10.1073/pnas.1602248113
DO - 10.1073/pnas.1602248113
M3 - Article
SN - 0027-8424
VL - 113
SP - 9187
EP - 9192
JO - Proceedings of the National Academy of Sciences of the United States of America
JF - Proceedings of the National Academy of Sciences of the United States of America
IS - 33
ER -