Rknots: Topological analysis of knotted biopolymers with R

Federico Comoglio; Maurizio Rinaldi

doi:10.1093/bioinformatics/bts160

Rknots: Topological analysis of knotted biopolymers with R

Federico Comoglio, Maurizio Rinaldi

Dipartimento di Scienze del Farmaco

Risultato della ricerca: Contributo su rivista › Articolo in rivista › peer review

Abstract

Motivation: Rknots is a flexible R package providing tools for the detection and characterization of topological knots in biological polymers. The package is well documented and provides a simple syntax for data import and preprocessing, structure reduction, topological analyses and 2D and 3D visualization. Remarkably, Rknots is not limited to protein knots and allows researchers from interdisciplinary fields to analyze different topological structures and to develop simple yet fully custom pipelines.

Lingua originale	Inglese
Numero di articolo	bts160
pagine (da-a)	1400-1401
Numero di pagine	2
Rivista	Bioinformatics
Volume	28
Numero di pubblicazione	10
DOI	https://doi.org/10.1093/bioinformatics/bts160
Stato di pubblicazione	Pubblicato - mag 2012

Accesso al documento

10.1093/bioinformatics/bts160

Altri file e collegamenti

Link to publication in Scopus

Cita questo

@article{a88095404c5244b7b06b26e300cfbbd8,

title = "Rknots: Topological analysis of knotted biopolymers with R",

abstract = "Motivation: Rknots is a flexible R package providing tools for the detection and characterization of topological knots in biological polymers. The package is well documented and provides a simple syntax for data import and preprocessing, structure reduction, topological analyses and 2D and 3D visualization. Remarkably, Rknots is not limited to protein knots and allows researchers from interdisciplinary fields to analyze different topological structures and to develop simple yet fully custom pipelines.",

author = "Federico Comoglio and Maurizio Rinaldi",

note = "Funding Information: Funding: This work was partially funded by the Italian Ministry of Education, University and Research (MIUR).",

year = "2012",

month = may,

doi = "10.1093/bioinformatics/bts160",

language = "English",

volume = "28",

pages = "1400--1401",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "10",

}

TY - JOUR

T1 - Rknots

T2 - Topological analysis of knotted biopolymers with R

AU - Comoglio, Federico

AU - Rinaldi, Maurizio

N1 - Funding Information: Funding: This work was partially funded by the Italian Ministry of Education, University and Research (MIUR).

PY - 2012/5

Y1 - 2012/5

N2 - Motivation: Rknots is a flexible R package providing tools for the detection and characterization of topological knots in biological polymers. The package is well documented and provides a simple syntax for data import and preprocessing, structure reduction, topological analyses and 2D and 3D visualization. Remarkably, Rknots is not limited to protein knots and allows researchers from interdisciplinary fields to analyze different topological structures and to develop simple yet fully custom pipelines.

AB - Motivation: Rknots is a flexible R package providing tools for the detection and characterization of topological knots in biological polymers. The package is well documented and provides a simple syntax for data import and preprocessing, structure reduction, topological analyses and 2D and 3D visualization. Remarkably, Rknots is not limited to protein knots and allows researchers from interdisciplinary fields to analyze different topological structures and to develop simple yet fully custom pipelines.

UR - http://www.scopus.com/inward/record.url?scp=84861147882&partnerID=8YFLogxK

U2 - 10.1093/bioinformatics/bts160

DO - 10.1093/bioinformatics/bts160

M3 - Article

SN - 1367-4803

VL - 28

SP - 1400

EP - 1401

JO - Bioinformatics

JF - Bioinformatics

IS - 10

M1 - bts160

ER -

Rknots: Topological analysis of knotted biopolymers with R

Abstract

Accesso al documento

Altri file e collegamenti

Fingerprint

Cita questo