TY - JOUR
T1 - Model verification tools
T2 - a computational framework for verification assessment of mechanistic agent-based models
AU - Russo, Giulia
AU - Parasiliti Palumbo, Giuseppe Alessandro
AU - Pennisi, Marzio
AU - Pappalardo, Francesco
N1 - Publisher Copyright:
© 2022, The Author(s).
PY - 2021/11
Y1 - 2021/11
N2 - Background: Nowadays, the inception of computer modeling and simulation in life science is a matter of fact. This is one of the reasons why regulatory authorities are open in considering in silico trials evidence for the assessment of safeness and efficacy of medicinal products. In this context, mechanistic Agent-Based Models are increasingly used. Unfortunately, there is still a lack of consensus in the verification assessment of Agent-Based Models for regulatory approval needs. VV&UQ is an ASME standard specifically suited for the verification, validation, and uncertainty quantification of medical devices. However, it can also be adapted for the verification assessment of in silico trials for medicinal products. Results: Here, we propose a set of automatic tools for the mechanistic Agent-Based Model verification assessment. As a working example, we applied the verification framework to an Agent-Based Model in silico trial used in the COVID-19 context. Conclusions: Using the described verification computational workflow allows researchers and practitioners to easily perform verification steps to prove Agent-Based Models robustness and correctness that provide strong evidence for further regulatory requirements.
AB - Background: Nowadays, the inception of computer modeling and simulation in life science is a matter of fact. This is one of the reasons why regulatory authorities are open in considering in silico trials evidence for the assessment of safeness and efficacy of medicinal products. In this context, mechanistic Agent-Based Models are increasingly used. Unfortunately, there is still a lack of consensus in the verification assessment of Agent-Based Models for regulatory approval needs. VV&UQ is an ASME standard specifically suited for the verification, validation, and uncertainty quantification of medical devices. However, it can also be adapted for the verification assessment of in silico trials for medicinal products. Results: Here, we propose a set of automatic tools for the mechanistic Agent-Based Model verification assessment. As a working example, we applied the verification framework to an Agent-Based Model in silico trial used in the COVID-19 context. Conclusions: Using the described verification computational workflow allows researchers and practitioners to easily perform verification steps to prove Agent-Based Models robustness and correctness that provide strong evidence for further regulatory requirements.
KW - Agent-based models
KW - COVID-19
KW - In silico trials
KW - Medicinal product
KW - Regulatory context
KW - Verification assessment
UR - https://www.scopus.com/pages/publications/85130388346
U2 - 10.1186/s12859-022-04684-0
DO - 10.1186/s12859-022-04684-0
M3 - Article
SN - 1471-2105
VL - 22
JO - BMC Bioinformatics
JF - BMC Bioinformatics
M1 - 626
ER -