Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs

S. Montani; G. Leonardi; S. Ghignone; L. Lanfranco

doi:10.1007/978-3-642-15515-4_15

Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs

S. Montani, G. Leonardi, S. Ghignone, L. Lanfranco

Dipartimento di Scienze e Innovazione Tecnologica

Risultato della ricerca: Capitolo in libro/report/atti di convegno › Contributo a conferenza › peer review

Abstract

Studying the interactions between arbuscular mycorrhizal fungi (AMFs) and their symbiotic endobacteria has potentially strong impacts on the development of new biotechnology applications. The analysis of genomic data and syntenies is a key technique for acquiring information about phylogenetic relationships and metabolic functions of such organisms. In this paper, we describe a modular architecture meant to support in-silico genome sequence analysis, which is being developed within the project BIOBITS. In particular, we focus on a flexible genome retrieval tool, which supports optimized and customized comparative genomics searches.

Lingua originale	Inglese
Titolo della pubblicazione ospite	E-Health - 1st IMIA/IFIP Joint Symposium, E-Health 2010 Held as Part of WCC 2010, Proceedings
Editor	Hiroshi Takeda, Hiroshi Takeda, Hiroshi Takeda
Editore	Springer New York LLC
Pagine	138-147
Numero di pagine	10
ISBN (elettronico)	9783642155147
DOI	https://doi.org/10.1007/978-3-642-15515-4_15
Stato di pubblicazione	Pubblicato - 2010
Evento	1st IMIA/IFIP Joint Symposium on E-Health, 2010 held as part of World Computer Congress, WCC 2010 - Brisbane, Australia Durata: 20 set 2010 → 23 set 2010

Serie di pubblicazioni

Nome	IFIP Advances in Information and Communication Technology
Volume	335
ISSN (stampa)	1868-4238
ISSN (elettronico)	1868-422X

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???event.eventtypes.event.conference???	1st IMIA/IFIP Joint Symposium on E-Health, 2010 held as part of World Computer Congress, WCC 2010
Paese/Territorio	Australia
Città	Brisbane
Periodo	20/09/10 → 23/09/10

Accesso al documento

10.1007/978-3-642-15515-4_15

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Montani, S., Leonardi, G., Ghignone, S., & Lanfranco, L. (2010). Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs. In H. Takeda, H. Takeda, & H. Takeda (Edd.), E-Health - 1st IMIA/IFIP Joint Symposium, E-Health 2010 Held as Part of WCC 2010, Proceedings (pagg. 138-147). (IFIP Advances in Information and Communication Technology; Vol. 335). Springer New York LLC. https://doi.org/10.1007/978-3-642-15515-4_15

Montani, S. ; Leonardi, G. ; Ghignone, S. et al. / Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs. E-Health - 1st IMIA/IFIP Joint Symposium, E-Health 2010 Held as Part of WCC 2010, Proceedings. curatore / Hiroshi Takeda ; Hiroshi Takeda ; Hiroshi Takeda. Springer New York LLC, 2010. pagg. 138-147 (IFIP Advances in Information and Communication Technology).

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title = "Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs",

abstract = "Studying the interactions between arbuscular mycorrhizal fungi (AMFs) and their symbiotic endobacteria has potentially strong impacts on the development of new biotechnology applications. The analysis of genomic data and syntenies is a key technique for acquiring information about phylogenetic relationships and metabolic functions of such organisms. In this paper, we describe a modular architecture meant to support in-silico genome sequence analysis, which is being developed within the project BIOBITS. In particular, we focus on a flexible genome retrieval tool, which supports optimized and customized comparative genomics searches.",

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Montani, S , Leonardi, G, Ghignone, S & Lanfranco, L 2010, Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs. in H Takeda, H Takeda & H Takeda (edd.), E-Health - 1st IMIA/IFIP Joint Symposium, E-Health 2010 Held as Part of WCC 2010, Proceedings. IFIP Advances in Information and Communication Technology, vol. 335, Springer New York LLC, pagg. 138-147, 1st IMIA/IFIP Joint Symposium on E-Health, 2010 held as part of World Computer Congress, WCC 2010, Brisbane, Australia, 20/09/10. https://doi.org/10.1007/978-3-642-15515-4_15

Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs. / Montani, S.; Leonardi, G.; Ghignone, S. et al.
E-Health - 1st IMIA/IFIP Joint Symposium, E-Health 2010 Held as Part of WCC 2010, Proceedings. a cura di / Hiroshi Takeda; Hiroshi Takeda; Hiroshi Takeda. Springer New York LLC, 2010. pag. 138-147 (IFIP Advances in Information and Communication Technology; Vol. 335).

Risultato della ricerca: Capitolo in libro/report/atti di convegno › Contributo a conferenza › peer review

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AB - Studying the interactions between arbuscular mycorrhizal fungi (AMFs) and their symbiotic endobacteria has potentially strong impacts on the development of new biotechnology applications. The analysis of genomic data and syntenies is a key technique for acquiring information about phylogenetic relationships and metabolic functions of such organisms. In this paper, we describe a modular architecture meant to support in-silico genome sequence analysis, which is being developed within the project BIOBITS. In particular, we focus on a flexible genome retrieval tool, which supports optimized and customized comparative genomics searches.

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Montani S , Leonardi G, Ghignone S, Lanfranco L. Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs. In Takeda H, Takeda H, Takeda H, editor, E-Health - 1st IMIA/IFIP Joint Symposium, E-Health 2010 Held as Part of WCC 2010, Proceedings. Springer New York LLC. 2010. pag. 138-147. (IFIP Advances in Information and Communication Technology). doi: 10.1007/978-3-642-15515-4_15

Flexible genome retrieval for supporting in-silico studies of endobacteria-AMFs

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