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Compression boosting in optimal linear time using the Burrows-Wheeler Transform

  • Paolo Ferragina
  • , Giovanni Manzini

Research output: Contribution to conferencePaperpeer-review

Abstract

In this paper we provide the first compression booster that turns a zeroth order compressor into a more effective k-th order compressor without any loss in time efficiency. More precisely, let A be an algorithm that compresses a string s within λ|s|H0*(s)+ bits of storage in O(T(|s|)) time, where H0*(s) is the zeroth order entropy of the string s. Our booster improves A by compressing s within λ|s|Hk*(s) + log2 |s| + gk bits still using O(T(|s|)) time, where H k*(s) is the k-th order entropy of s. The idea of a "compression booster" has been very recently introduced by Giancarlo and Sciortino in [7]. They combined the Burrows-Wheeler Transform with dynamic programming and achieved our same compression bound but with running time O(T(|s|)) + Ω(|s|2). We start from the same premises of [7], but instead of using dynamic programming we design a linear time optimization algorithm based on novel structural properties of the Burrows-Wheeler Transform.

Original languageEnglish
Pages648-656
Number of pages9
Publication statusPublished - 2004
Externally publishedYes
EventProceedings of the Fifteenth Annual ACM-SIAM Symposium on Discrete Algorithms - New Orleans, LA., United States
Duration: 11 Jan 200413 Jan 2004

Conference

ConferenceProceedings of the Fifteenth Annual ACM-SIAM Symposium on Discrete Algorithms
Country/TerritoryUnited States
CityNew Orleans, LA.
Period11/01/0413/01/04

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